How can I configure GitHub App authentication in Jenkins to securely access a repository, troubleshoot a JWT decoding error, and set up the necessary permissions?

Question: How to Configure GitHub App Authentication in Jenkins Pipeline for Secure Repository Access

I’m trying to configure GitHub App authentication in a Jenkins pipeline to securely access a GitHub repository at the organization level. I’ve set up the GitHub App with the following permissions:

- Administration: Read-only
- Checks: Read & write
- Contents: Read-only
- Metadata: Read-only
- Pull requests: Read-only

In my pipeline, I’m generating a JWT, exchanging it for an access token, and using the token to clone the repository. However, I keep encountering a 401 error with the message: “A JSON web token could not be decoded.”

Could someone guide me on correctly setting up the GitHub App credentials in Jenkins and troubleshooting this JWT decoding error?

Jenkins Setup:

stage('Generate JWT and Clone Repository') {
                environment {
                    // Hardcoded Credentials and Repository Information
                    APP_ID = "asdfadsfasdf"                  // Replace with your GitHub App ID
                    INSTALLATION_ID = "1234567"       // Replace with your GitHub App Installation ID
                    PEM_CONTENT = '''
                    -----BEGIN RSA PRIVATE KEY-----
                    
                    -----END RSA PRIVATE KEY-----
                    '''                       // Replace with the full contents of your PEM file
                    REPO_URL = "github.com/org_name/repo_name.git" // Replace with your repo URL
                }
                steps {
                    script {
                        // Step 1: Write PEM content to a temporary file with appropriate permissions
                        // def pemFile = 'github_app_private_key.pem'
                        // writeFile file: pemFile, text: PEM_CONTENT
                        // sh "chmod 600 ${pemFile}"

                        // Step 2: Generate JWT using the PEM file and add debugging for each component
                        echo "Generating JWT..."
                        env.JWT = sh(
                            script: """#!/bin/bash
                            # Generate JWT Header
                            HEADER=\$(echo -n '{"alg":"RS256","typ":"JWT"}' | openssl base64 | tr -d '=' | tr '/+' '_-' | tr -d '\\n')
                            
                            # Generate JWT Payload
                            PAYLOAD=\$(echo -n "{\\"iss\\":${APP_ID},\\"iat\\":\$(date +%s),\\"exp\\":\$(( \$(date +%s) + 600 ))}" | openssl base64 | tr -d '=' | tr '/+' '_-' | tr -d '\\n')
                            
                            # Generate JWT Signature
                            HEADER_PAYLOAD="\${HEADER}.\${PAYLOAD}"
                            SIGNATURE=\$(echo -n "\${HEADER_PAYLOAD}" | openssl dgst -sha256 -sign ${PEM_CONTENT} | openssl base64 | tr -d '=' | tr '/+' '_-' | tr -d '\\n')

                            # Combine to form JWT
                            echo "\${HEADER}.\${PAYLOAD}.\${SIGNATURE}"
                            """,
                            returnStdout: true
                        ).trim()

                        if (!env.JWT) {
                            error("JWT generation failed.")
                        } else {
                            echo "JWT generated successfully and stored as a global environment variable."
                        }

                        // Step 3: Exchange the JWT for an installation access token and store the response as a global environment variable
                        echo "Requesting installation access token..."
                        env.RESPONSE = sh(
                            script: """#!/bin/bash
                            curl -s -X POST \
                            -H "Authorization: Bearer ${env.JWT}" \
                            -H "Accept: application/vnd.github+json" \
                            https://api.github.com/app/installations/${INSTALLATION_ID}/access_tokens
                            """,
                            returnStdout: true
                        ).trim()

                        // Debugging: Output the API response
                        echo "GitHub API response: ${env.RESPONSE}"

                        // Parse the token from the RESPONSE
                        def jsonResponse = readJSON(text: env.RESPONSE)
                        def accessToken = jsonResponse.token

                        if (!accessToken) {
                            error("Failed to obtain access token. Response: ${env.RESPONSE}")
                        } else {
                            echo "Access token obtained successfully."
                        }

                        // Step 4: Clone the repository using the access token
                        echo "Cloning repository..."
                        sh "git clone https://x-access-token:${accessToken}@${REPO_URL}"

                        echo "Repository cloned successfully."

                        // Step 5: Clean up PEM file
                        sh "rm -f ${PEM_CONTENT}"
                    }
                }
            }